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Monday, July 24, 2017

BIOB51 UTSC CHAPTER 3 Lec 1 Textbook Summary

Lec 01 & 2 Reading BIOB51: p. 73-97
Chapter 3: Evolution by Natural Selection
-       Natural selection is sufficient straightforward that at least two authors discovered it well before Darwin. WC wells used it to explain how human populations on different continents came to differ in their physical appearance and resistance to disease
-       Patrick Matthew discussed it on farming trees for lumber with which to build ships.
-       Alfred Russel Wallace discovered natural selection independently while Darwin was incubating his ideas
-       Biologists thought natural selection w/ greater skepticism than evolution itself

3.1 Artificial Selection: Domestic Animals and Plants
-       Darwin studied the method breeders use to modify their crops and livestock. His fave = pigeons
-       We still study the tomato
o   Wild tomatoes have tiny fruit and domestic tomatoes are huge as a result of artificial selection
o   Tomatoes carry a gene called fw2.2, which encodes a protein made during early fruit development. Its job is to repress cell division. The more of that protein the tomato has, the smaller it will be
o   Fas is another gene that influences fruit size by controlling the number of compartments in the mature fruit. More compartments = larger fruit
-       Organisms with traits favoured by humans would fare badly in the wild
-       Small fruits are better because small animals that would disperse the seeds more easily carry them?
-       NA grey wolves have acquired a genetic variant conferring a black coat that benefits individuals living in forests

3.2 Evolution by Natural Selection
Darwin’s 4 postulates in On the Origin of Species:
-       If all 4 postulates hold, then the composition of the population inevitably changes from 1 generation to the next
-       Darwinian fitness: individual’s ability to survive and reproduce
o   Fitness is relative bc it refers to how well an individual survives and reproduces compared to other individual of its species
-       Adaptations: a trait that increases fitness relative to others lacking it
-       Each of the 4 postulates can verified independently = the theory is testable

3.3 The Evolut’n of Flower Colour in an Experimental Snapdragon Pop.
-       Experimental population of 48 individuals in which they made sure Darwin’s postulates 1 and 2 were true. Then they monitored the plants and their offspring to see whether postulates 3 and 4, were true as well
1.     The snapdragon population varied in flower colour. ¾ of the plants had flowers that were almost pure white, with just 2 spots of yellow on the lower lip. The rest had flowers that were yellow all over
2.     Colour variation was due to differences in the plants’ genotypes for a single gene. The gene has two alleles S and s. Genotypes with either SS or Ss have white flowers w/ 2 spots of yellow. ss are yellow all over. 12 were SS 24 were Ss and 2 were ss.
3.     Testing postulate 3: Do individuals vary in their success @ surviving or reproducing? They let free bumblebees pollinate the plants. They tracked the number of times bees visited each flower. The plants showed considerable variation in reproductive success, both as pollen donors and as seed mothers.
4.     Testing postulate 4: Is reproduction non-random? They found that white flowers attracted twice as many bee visits as yellow flowers.

Testing Darwin’s Prediction: Did the Population Evolve?
-       The bumblebee selected particular individuals in the target population and granted them high reproductive success
-       White plants had higher reproductive success than yellow, and since flower colour is determined by genes, then next generation of snapdragons should have had a higher proportion of white flowers
-       The next gen did have higher proportion of white flowers
-       75% had white flowers and 77% amongst their offspring had white flowers
-       They did evolve as predicted
-       Jones and Reithel’s experiment shows that Darwin’s theory works
-       Turn to research of finches to find out whether the theory works in nature

3.4 The Evolution of Beak Shape in Galapagos Finches
-       Finches are birds derived from a small flock of dome-nested finches that invaded the archipelago, most likely from the Caribbean, 2-3 million years ago
-       Descendents of this flock comprise 13 species that inhabit Galapagos
-       The deepest split on the evolutionary tree separates 2 lineages of warbler finches
-       Third-deepest split separtes two lineages of sharp-beaked ground finches that are likewise considered a single species
-       All species of Darwin’s finches are similar in size and coloration
o   Range from about 4-6 inches in length and from brown to black in color
o   They show a lot of variation in beak size and shape
-       Warbler finches feed on insects, spiders and nectar
-       The vegetarian finch eats leaves and fruit
-       Medium ground finch (Daphne major)
o   Population is small enough to be studies exhaustively
§  Since 1980, almost 100% of the population has been marked
o   Location and tiny size make it a superb natural laboratory
§  It is the top of a volcano, rises from sea to max elevation of just 120 meters
§  Main crater and small secondary crater
§  Only 1 spot on the island is both flat and large enough to pitch a camp
§  Climate is seasonal
§  Vegetation consists of a dry forest and scrub along with several species of cactus
o   Generation time is about 4.5 years
o   Primarily seed eaters
-       Beak size is correlated with the size of the seeds harvested; larger beaks = larger seeds

Testing Postulate 1: Is the Finch population variable?
-       Yes, they vary in wing and tail length, beak width, depth, and length
-       Variation among the individuals within populations is virtually universal

Testing Postulate 2: Is some of the variation amongst individuals heritable?
-       Heritability of a trait is defined as the fraction of the variation in a population that is due to differences in genes
-       It can take any value between 0-1
-       Boag’s data revealed a strong correspondence among relatives
-       BMP4 is a signalling molecule that helps sculpt the shape of bird beaks
-       The genetic mechanisms responsible for variation among individuals within species may or may not be the same as those responsible for differences between species

Testing Postulate 3: Do Individuals vary in their success at surviving and reproducing?
-       1977 there was a drought resulting in plants making few flowers and seeds
-       The medium ground finches did not even try to breed
-       Inferred that most died of starvation
-       Only a fraction of the population survived to reproduce in 1978
-       In every natural population studied, more offspring are produced in each generation than survive to breed
-       In a population of constant size, each parent, over its lifetime, leaves an average of 1 offspring that survives to breed
-       Elephants are the slowest known breeder known among animals
-       The only thing that saves us from being buried in starfish and elephants is massive mortality

Testing Postulate 4: Are survival and reproduction non-random?
-       A non-random group of medium ground finch survived the 1977 drought
-       As the drought wore on, the number as well as the types of seeds available changed
-       Large hard fruits became a key food item after the drought dried out all the soft seeds
-       Only birds with deep narrow beaks were able to crack and eat the Tribulus fruits
-       In wet years, small birds with shallow beaks survive better and reproduce more because they harvest small seeds more sufficiently
-       Natural selection is dynamic

Testing Darwin’s Prediction: Did the population evolve?
-       All 4 of the postulates were true for the medium ground finch population on Daphne Major
-       There was another drought in 2003-2004 but this time the medium ground finches had to compete with another species of finches
-       They were larger so they dominated and ate the tribulus fruits that they had survived on before. As a result, the finches died at an even higher rate

3.5 The Nature of Natural Selection
Natural Selection Acts on Individuals, but its Consequences Occur in Populations
-       None of the individuals in the snapdragons or finches changed
-       What changed was the characteristics of the overall population
-       The effort of cracking the tribulus seeds did not make the beaks of individual finches grow larger nor did the birds need more food, or their desire for bigger beaks make their beaks grow
-       Exposure to particular environmental circumstances changes the phenotypes of individuals
o   Ex. spending time in the sun gives you tan but the changes are not passed onto the offspring. A woman who sunbathes while pregnant does not give birth to a baby with darker skin, but what she and the father pass to the baby is a heritable tanning capacity
Natural selection Acts on Phenotypes, but Evolution Consists of Changes in Allele Frequencies
-       Only when the survivors of selection pass their successful phenotypes to their offspring, via genotypes does natural selection cause populations to change from 1 gen to the next

Natural selection is not forward looking
-       Involve no conscious entity with foresight. Evolving populations always lag at least a generation behind changes in the environment
Although Selection Acts on Existing Traits, New Traits Can Evolve
-       Selection itself generates no new genetic variation, adaptive or otherwise
-       Study at University of Illinois:
o   162 ears of corn
o   In the starting population, oil content = 4-6% by weight
o   After 100 gens of selection, the average oil content was about 20%
-       Persistent natural selection can lead to the evolution of new fxns for existing behaviours, structures, or genes
-       Exaptation: a trait that is used in a novel way
o   Represent happenstance, enhances an individual’s fitness a lot
-       Secondary adaptations: additional modifications that arise during exaptation
o   A trait may eventually be elaborated into a completely new structure bu selection related to its new fxn
-       Ex. venus fly trap with leaves modified into snap traps, and monkey cups with pitfall traps that develop from tendrils on leaf tips

Natural Selection Does Not Lead to Perfection
-       Evolution does not result in organisms that are perfect
-       Populations may face contradictory patterns of selection
o   Ex. male mosquitofish who anal fin is modified to serve as a copulatory organ, or gonopodium
§  Females prefer males with larger gonopodia, but whenpredators attack, a big gonopodium slows them down, no male can be both
-       Natural selection leads to adaptation, not perfection

Natural Selection is Nonrandom, but It Is Not Progressive
-       Evolution by natural selection is not a random or chance process
-       Mutation and recombination is random
-       Definition: non-random superiority at survival and reproduction of some variants over others
-       Completely free of conscious intent
-       Darwin regretted using the phrase “naturally selected” because it lead to some people thinking that it was a decision made by a sentient entity
-       Evolution is not progressive in the sense of moving toward a predetermined goal
-       They only improve in that their average adaptation to the environment increases
-       There is no inexorable trend toward more advanced forms of life
-       “Never use the worlds higher or lower” when discussing evolutionary relationships

Fitness is not circular
-       “the survival of the survivors”
-       Survival of the fittest is a misleading phrase
-       The essential feature of natural selection is that certain heritable variants do better than others
-       As long as a non-random subset of the population survives at higher rates and leaves more offspring, evolution will result
-       Darwinian fitness is not an abstract quantity, it can be measured in nature
o   Done by counting the offspring that individuals produce, or by observing their ability to survive a selection event, and comparing each individual’s performance to that of others in the population

Selection acts on individuals, not for the good of the species
-       Common misconception: individual organisms preform actions for the good of the species
-       Altruistic acts do occur in nature
-       Traits cannot evolve by natural selection unless they increase the fitness of the genes responsible for them relative to the fitness of other genes
o   Ex. when the beneficiaries are kin or can be counted on to repay the favour
-       Ex. lions doing things for the good of the species in their prides
o   Killing cubs to increase the new alpha’s fitness because pride females become fertile again sooner and will conceive offspring by the new males
o   Infanticide is widespread in animals

3.6 The Evolution of Evolutionary Biology
-       Darwin’s theory as one o the great ideas in intellectual history
-       The theory was not accepted until 70 years after it was initially proposed
-       3 serious problems

Variation
-       Darwin didn’t know about mutations and how variability was generated in populations
-       Was not until 1900s when Morgan began experiments with fruit flies
o   Showed that mutations occur in every generation and in every trait

Inheritance
-       Darwin had no idea how variations are passed to offspring
-       Biologists didn’t understand inheritance until Mendel’s pea
-       Blending inheritance: favourable variants would merge into existing trants and be lost
o   Ex. when people w/ light skin land on an island full of a people w/ dark skin. Even tho it might be advantageous to have light skin in that population, even their offspring will have brown skin. No one will ever have fully light skin
-       Lamarck: offspring inherit phenotypic chances acquired by their parents (WRONG AF)

Time
-       William Thomson: Estimated the age of Earth at 15-20 million years
o   Based on measurements of the Sun’s heat and temp of the earth
o   Because fire was the only known heat source, he assumed that the Sun was burning a giant lump of coal and slowly burning out
-       Geologists and physicists believed that the surface of the Earth was gradually cooling
-       Earth was changing from a molten state to a solid one by radiating heat to the atmosphere – a view supported by measurements of higher temps deeper down in mineshafts (this data allowed Thomson to calculate the rate of radiant cooling)
-       The window that Thomson calculated was too small for the gradual changes of Darwinism to accumulate and supported a role for special creation in explaining adaptation and diversity
-       Calculations were correct, assumptions were wrong
o   The Earth’s heat is from nuclear fusion, not combustion

The Modern Synthesis
-       Between 1932 and 1953, a lot of books integrated genetics with Darwin’s 4 postulates and led to a reformation of the theory of evolution, known as the modern synthesis was a consensus grounded in two propositions
1.     Gradual evolution results from small genetic changes that rise and fall in frequency under natural selection 
2.     Origin of species and higher taxa, or macroevolution, can be explained in terms of natural selection acting on individuals, or microevolution
-       The original 4 postulates were reinstated:
-       Outcome: alleles associated w/ higher fitness increase in frequency from 1 generation to the next
-       “Natural selection has been the main but not exclusive means of modification” – Darwin
o   We now think of evolution in terms of changes in the frequencies of alleles responsible for traits
-       Darwinian view of life: a competition between individuals w/ varying abilities to survive and reproduce has been proven correct in almost every detail


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